Anchorpoints

Gene id
AT5G25220
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G11060KNOTTED1-like homeobox gene 4 (KNAT4); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1); Has 5905 Blast hits to 5890 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2030; Fungi - 312; Plants - 3367; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). KNOTTED1-like homeobox gene 4 A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.5+View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G06170No description available.Bd3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G08544Homeobox protein knotted-1-like 2 homeobox protein knotted-1, putative, expressed2+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_02G08360No description available.Chr02+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT18G02270No description available.Chr18+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB04G005620No description available.chr_4+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI001G06390No description available.scaffold_1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G12730name=GSVIVG01035921001;chr4+View


Download

Gene id
Species
Description
Chromosome
Strand