Anchorpoints

Gene id
AT5G16090
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT3G02540Rad23 UV excision repair protein family RADIATION SENSITIVE23C (RAD23C); FUNCTIONS IN: ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT5G38470.1); Has 42093 Blast hits to 23907 proteins in 1708 species: Archae - 163; Bacteria - 9780; Metazoa - 10471; Fungi - 4857; Plants - 6883; Viruses - 1548; Other Eukaryotes - 8391 (source: NCBI BLink). Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.3-View


Orthologs (inter-species colinear regions)

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G11400No description available.Chr17-View
PT04G10070No description available.Chr04+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G063130UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY)%3B contains Interpro domain(s) IPR004806 UV excision repair protein Rad23ch02-View
SL02G085840UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY)%3B contains Interpro domain(s) IPR000626 Ubiquitinch02-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G08170name=GSVIVG01031048001;chr14+View


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Gene id
Species
Description
Chromosome
Strand