PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT5G05290
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G40610	expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A8	2	-	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD2G53580	No description available.	Bd2	+	View
BD2G22290	No description available.	Bd2	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00019G00660	No description available.	supercontig_19	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA07G22630	CC_gene:EXPA10,CC_gene:EXPA15,CC_gene:EXPA8,CC_gene:EXPA1,CC_gene:EXPA4,CC_gene:EXPA2,CC_functional_completeness:complete,PRODUCT:Expansin-A2,GO:0009664,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr7	+	View
MA11G24320	CC_gene:EXPA15,CC_gene:EXPA1,CC_gene:EXPA8,CC_gene:EXPA4,CC_gene:EXPA2,CC_functional_completeness:complete,PRODUCT:Expansin-A2,GO:0009664,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr11	+	View
MA09G04920	CC_gene:EXPA10,CC_gene:EXPA15,CC_gene:EXPA1,CC_gene:EXPA4,CC_gene:EXPA8,CC_gene:EXPA2,CC_functional_completeness:complete,PRODUCT:Expansin-A2,GO:0009664,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr9	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS03G21820	expansin precursor, putative, expressed Expansin-A6	3	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_03G20790	No description available.	Chr03	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT19G05750	No description available.	Chr19	-	View
PT16G13520	No description available.	Chr16	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB09G023440	No description available.	chr_9	-	View
SB03G038290	No description available.	chr_3	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL05G052250	Expansin 2 (AHRD V1 ***- C0LU46_CITSI)%3B contains Interpro domain(s) IPR002963 Expansin	ch05	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV08G05910	name=GSVIVG01030191001;	chr8	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM03G28280	alpha expansin1;alpha expansin1	3	-	View