Anchorpoints

Gene id
AT5G01360
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G58600Plant protein of unknown function (DUF828) Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). POWDERY MILDEW RESISTANT 5 (PMR5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 45 (TAIR:AT2G30010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View
AT2G38320TRICHOME BIREFRINGENCE-LIKE 34 (TBL34); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 35 (TAIR:AT5G01620.2); Has 1346 Blast hits to 1317 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). TRICHOME BIREFRINGENCE-LIKE 34 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).2+View
AT2G40150Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). TRICHOME BIREFRINGENCE-LIKE 28 TRICHOME BIREFRINGENCE-LIKE 28 (TBL28); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1332 Blast hits to 1305 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2+View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G65530No description available.Bd1-View
BD1G16610No description available.Bd1+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA11G25500CC_gene:trpS,CC_gene:C7orf58,CC_gene:atpF,CC_functional_completeness:fragment,PRODUCT:expressed protein,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr11+View
MA05G28970CC_gene:secA,CC_gene:secD,CC_functional_completeness:complete,PRODUCT:expressed protein,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS05G39350PMR5, putative, expressed5-View
OS07G49280PMR5, putative, expressed7-View
OS03G18110proteins of unknown function domain containing protein, putative, expressed3+View
OS01G61460leaf senescence related protein, putative, expressed1+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G16780No description available.Chr03+View
OSINDICA_07G41260No description available.Chr07-View
OSINDICA_01G58140No description available.Chr01+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT16G11910No description available.Chr16-View
PT10G18730No description available.Chr10-View
PT08G06990No description available.Chr08+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G038800No description available.chr_3+View
SB02G043950No description available.chr_2-View
SB08G000470No description available.chr_8+View
SB01G038450No description available.chr_1-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI009G45370No description available.scaffold_9-View
SI002G45230No description available.scaffold_2-View
SI005G37630No description available.scaffold_5+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G076570No description available.ch10-View
SL10G085320No description available.ch10+View
SL06G082070No description available.ch06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G01580name=GSVIVG01024714001;chr6+View
VV13G10310name=GSVIVG01032800001;chr13+View
VV08G00440name=GSVIVG01011180001;chr8+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G12310No description available.1+View
ZM07G30860No description available.7-View


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Gene id
Species
Description
Chromosome
Strand