Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AT4G37950
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G22620 | Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1); Has 306 Blast hits to 289 proteins in 68 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 87; Plants - 167; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). Rhamnogalacturonate lyase family protein | 2 | - | View |
| AT1G09880 | Rhamnogalacturonate lyase family protein Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 288 Blast hits to 274 proteins in 61 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 85; Plants - 160; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | 1 | - | View |
Orthologs (inter-species colinear regions)
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00129G00070 | No description available. | supercontig_129 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT02G11000 | No description available. | Chr02 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL04G076630 | Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM)%3B contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase | ch04 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV18G04920 | name=GSVIVG01009215001; | chr18 | - | View |