Anchorpoints

Gene id
AT4G36740
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G66700homeobox 53 (HB53); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent, root development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 40 (TAIR:AT4G36740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development. homeobox 535+View
AT2G18550Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. homeobox protein 21 homeobox protein 21 (HB21); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 40 (TAIR:AT4G36740.1); Has 7525 Blast hits to 7522 proteins in 427 species: Archae - 0; Bacteria - 0; Metazoa - 5302; Fungi - 235; Plants - 1881; Viruses - 3; Other Eukaryotes - 104 (source: NCBI BLink).2-View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G71280No description available.Bd1+View
BD3G35850No description available.Bd3-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA01G23500CC_gene:HOX16,CC_gene:ATHB-53,CC_gene:ATHB-21,CC_gene:HOX12,CC_gene:HOX14,CC_gene:ATHB-40,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0043565,GO:0030528,GO:0005634,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr1+View
MA08G31930CC_gene:HOX20,CC_gene:ATHB-53,CC_gene:HOX12,CC_gene:ATHB-40,CC_gene:ATHB-21,CC_gene:HOX14,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0043565,GO:0030528,GO:0005634,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr8+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G10210Homeobox-leucine zipper protein HOX12 homeobox domain containing protein, expressed3-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G08710Homeobox-leucine zipper protein HOX12Chr03-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT07G02950No description available.Chr07+View
PT05G12610No description available.Chr05-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G043910No description available.chr_1+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI009G51970No description available.scaffold_9+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G034110Homeobox-leucine zipper protein ATHB-40 (AHRD V1 ***- D7MBE6_ARALY)%3B contains Interpro domain(s) IPR001356 Homeoboxch03+View
SL02G085630Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL)%3B contains Interpro domain(s) IPR001356 Homeoboxch02+View
SL02G062960Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL)%3B contains Interpro domain(s) IPR001356 Homeoboxch02-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G02610name=GSVIVG01019012001;chr4+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G07270No description available.1+View


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