Anchorpoints

Gene id
AT4G36260
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G19790A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 71-View
AT3G51060A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC) Lateral root primordium (LRP) protein-related STYLISH 1 (STY1); FUNCTIONS IN: protein heterodimerization activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G66350.1); Has 244 Blast hits to 244 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 9; Plants - 179; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).3+View
AT2G18120SHI-related sequence 4 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 4 (SRS4); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT4G36260.1); Has 174 Blast hits to 174 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2-View
AT5G66350SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid. Lateral root primordium (LRP) protein-related5-View


Orthologs (inter-species colinear regions)

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G01910No description available.supercontig_6+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G16060No description available.Chr04-View
PT05G11820No description available.Chr05-View
PT05G23420No description available.Chr05-View
PT07G01750No description available.Chr07-View
PT02G02850No description available.Chr02+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB10G029800No description available.chr_10+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI004G28680No description available.scaffold_4+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G084680Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch02+View
SL02G062400Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch02+View
SL03G033680Short internode related sequence 5 (AHRD V1 -*-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch03+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G01250name=GSVIVG01018845001;chr4-View
VV03G06180name=GSVIVG01024206001;chr3-View
VV18G09810name=GSVIVG01009812001;chr18-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G34070No description available.2-View
ZM05G15490No description available.5+View


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Species
Description
Chromosome
Strand