PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT4G34580
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G39170	Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT2G21520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Sec14p-like phosphatidylinositol transfer family protein	4	+	View
AT2G16380	Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G34580.1); Has 2691 Blast hits to 2676 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 614; Plants - 876; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink). Sec14p-like phosphatidylinositol transfer family protein	2	+	View
AT1G75370	Sec14p-like phosphatidylinositol transfer family protein Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G19650.1); Has 2578 Blast hits to 2567 proteins in 225 species: Archae - 0; Bacteria - 2; Metazoa - 778; Fungi - 522; Plants - 891; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).	1	-	View
AT2G18180	Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14-like 12 (TAIR:AT4G36490.1); Has 2664 Blast hits to 2639 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 594; Plants - 895; Viruses - 1; Other Eukaryotes - 413 (source: NCBI BLink). Sec14p-like phosphatidylinositol transfer family protein	2	-	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD3G03020	No description available.	Bd3	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00006G01670	No description available.	supercontig_6	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA10G21140	CC_gene:YKL091C,CC_gene:SEC14,CC_gene:sec14,CC_functional_completeness:modules,PRODUCT:Putative Sec14 cytosolic factor,GO:0006810,GO:0005622,GO:0005215,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr10	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS02G04020	No description available.	2	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_02G03360	No description available.	Chr02	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT09G11940	No description available.	Chr09	+	View
PT02G03260	No description available.	Chr02	+	View
PT04G15760	No description available.	Chr04	+	View
PT05G23050	No description available.	Chr05	-	View
PT05G11970	No description available.	Chr05	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB04G002750	No description available.	chr_4	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL10G053900	SEC14-like protein (AHRD V1 **-- Q9T027_ARATH)%3B contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function%2C C-terminal	ch10	-	View
SL04G080690	SEC14-like protein (AHRD V1 **-- Q9T027_ARATH)%3B contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function%2C C-terminal	ch04	-	View
SL01G109860	Phosphatidylinositol/phosphatidylcholine transfer protein-like (AHRD V1 *- Q9LRX7_ARATH)%3B contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function%2C C-terminal	ch01	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV03G02840	name=GSVIVG01023815001;	chr3	+	View