PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT4G34540
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G39230	encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: phenylcoumaran benzylic ether reductase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 1665 Blast hits to 1661 proteins in 371 species: Archae - 16; Bacteria - 474; Metazoa - 2; Fungi - 521; Plants - 522; Viruses - 3; Other Eukaryotes - 127 (source: NCBI BLink). NmrA-like negative transcriptional regulator family protein	4	-	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00006G01370	No description available.	supercontig_6	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT04G15660	No description available.	Chr04	+	View
PT09G11800	No description available.	Chr09	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G080550	Phenylcoumaran benzylic ether reductase (AHRD V1 **** B6VRE8_TOBAC)%3B contains Interpro domain(s) IPR008030 NmrA-like	ch04	+	View
SL03G033970	Phenylcoumaran benzylic ether reductase 3 (AHRD V1 **** B9HRL7_POPTR)%3B contains Interpro domain(s) IPR008030 NmrA-like	ch03	-	View
SL10G052490	Isoflavone reductase-like protein 5 (AHRD V1 ***- Q3KN68_VITVI)%3B contains Interpro domain(s) IPR008030 NmrA-like	ch10	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV03G02700	name=GSVIVG01023800001;	chr3	-	View