PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT4G23750
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G53290	cytokinin response factor 3 (CRF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). cytokinin response factor 3 encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	5	-	View
AT4G11140	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). cytokinin response factor 1 (CRF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 2 (TAIR:AT4G23750.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). cytokinin response factor 1	4	-	View
AT2G46310	CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. cytokinin response factor 5 (CRF5); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 6 (TAIR:AT3G61630.1); Has 5622 Blast hits to 5574 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5609; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink). cytokinin response factor 5	2	+	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00122G00260	No description available.	supercontig_122	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA06G32870	CC_gene:ERF3,CC_gene:PTI6,CC_gene:CRF6,CC_gene:CRF3,CC_gene:CRF5,CC_gene:CRF1,CC_gene:CRF2,CC_gene:CRF4,CC_functional_completeness:complete,PRODUCT:Putative AP2 domain containing protein%2C expressed,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr6	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT03G13630	No description available.	Chr03	+	View
PT02G16740	No description available.	Chr02	+	View
PT14G09450	No description available.	Chr14	+	View
PT01G09480	No description available.	Chr01	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB04G022943	No description available.	chr_4	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL08G081960	Ethylene-responsive transcription factor 4 (AHRD V1 -- ERF4_NICSY)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding	ch08	+	View
SL01G095500	Ethylene-responsive transcription factor 4 (AHRD V1 -- B6T615_MAIZE)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding	ch01	+	View