PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT4G01010
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G01340	cyclic nucleotide gated channel 10 member of Cyclic nucleotide gated channel family cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1).	1	-	View
AT2G46430	cyclic nucleotide gated channel 3 (CNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 3204 Blast hits to 3078 proteins in 223 species: Archae - 0; Bacteria - 24; Metazoa - 1501; Fungi - 4; Plants - 972; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink). cyclic nucleotide gated channel 3 cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance	2	+	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD3G09550	No description available.	Bd3	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS02G15580	cyclic nucleotide-gated ion channel 1, putative, expressed	2	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_02G14660	No description available.	Chr02	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G17000	No description available.	Chr02	+	View
PT14G09790	No description available.	Chr14	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB04G009240	No description available.	chr_4	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI001G01530	No description available.	scaffold_1	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL01G095770	Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO)%3B contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding	ch01	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV15G06270	name=GSVIVG01027087001;	chr15	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM04G36440	LOC100285094	4	+	View