Anchorpoints
- Gene id
- AT3G61230
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G01780 | Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. GATA type zinc finger transcription factor family protein GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1); Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 4032; Fungi - 22; Plants - 446; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). | 1 | + | View |
AT2G45800 | GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G61230.1); Has 6011 Blast hits to 3830 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 5054; Fungi - 46; Plants - 459; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink). Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. GATA type zinc finger transcription factor family protein | 2 | - | View |
Orthologs (inter-species colinear regions)
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD5G16666 | No description available. | Bd5 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00018G02190 | No description available. | supercontig_18 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS02G42820 | OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed | 2 | - | View |
OS04G45010 | OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed | 4 | - | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_02G41040 | No description available. | Chr02 | - | View |
OSINDICA_04G37100 | No description available. | Chr04 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G10710 | No description available. | Chr01 | + | View |
PT14G08090 | No description available. | Chr14 | - | View |
PT02G15730 | No description available. | Chr02 | - | View |
PT03G12430 | No description available. | Chr03 | - | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB06G023600 | No description available. | chr_6 | - | View |
SB04G033700 | No description available. | chr_4 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI001G26160 | No description available. | scaffold_1 | - | View |
SI007G18620 | No description available. | scaffold_7 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G094320 | Cysteine and glycine-rich protein 3 (AHRD V1 **-- D2SQP3_PIG)%3B contains Interpro domain(s) IPR001781 Zinc finger%2C LIM-type | ch01 | - | View |
SL10G017520 | Cysteine and glycine-rich protein 3 (AHRD V1 **-- D2SQP3_PIG)%3B contains Interpro domain(s) IPR001781 Zinc finger%2C LIM-type | ch10 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM04G19810 | No description available. | 4 | - | View |
ZM05G34810 | No description available. | 5 | - | View |
ZM02G08590 | No description available. | 2 | + | View |
ZM10G20900 | No description available. | 10 | - | View |