Anchorpoints

Gene id
AT3G60600
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G45140plant VAP homolog 12 plant VAP homolog 12 (PVA12); FUNCTIONS IN: structural molecule activity; LOCATED IN: cytosol, endoplasmic reticulum, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 140; Plants - 434; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.2+View


Orthologs (inter-species colinear regions)

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00049G01470No description available.supercontig_49+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G14400No description available.Chr02+View
PT14G05950No description available.Chr14+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G090910Vesicle-associated membrane protein-associated protein A (AHRD V1 ***- B6UGD8_MAIZE)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinch01+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV15G09430name=GSVIVG01027683001;chr15+View


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Gene id
Species
Description
Chromosome
Strand