PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT3G49780
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G65870	phytosulfokine 5 precursor (PSK5); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell proliferation, cell differentiation, organ morphogenesis; LOCATED IN: extracellular matrix; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: phytosulfokine 4 precursor (TAIR:AT3G49780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). phytosulfokine 5 precursor Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.	5	+	View
AT4G37720	phytosulfokine 6 precursor (PSK6); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell proliferation, cell differentiation, organ morphogenesis; LOCATED IN: extracellular matrix; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: phytosulfokine 2 precursor (TAIR:AT2G22860.1); Has 132 Blast hits to 132 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). phytosulfokine 6 precursor Probable phytosulfokines 6 precursor, coding for a unique plant peptide growth factor.	4	-	View
AT2G22860	phytosulfokine 2 precursor (PSK2); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell proliferation, cell differentiation, organ morphogenesis; LOCATED IN: extracellular matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: phytosulfokine 6 precursor (TAIR:AT4G37720.1); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). phytosulfokine 2 precursor Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	2	+	View

Orthologs (inter-species colinear regions)

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA03G26460	CC_gene:PSK1,CC_gene:PSK6,CC_gene:PSK4,CC_gene:PSK,CC_gene:PSK5,CC_gene:PSK2,CC_gene:PSK3,CC_functional_completeness:complete,PRODUCT:Phytosulfokines 3,GO:0008283,GO:0008083,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr3	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS03G12990	phytosulfokines precursor, putative, expressed	3	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_03G11410	No description available.	Chr03	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT14G01400	No description available.	Chr14	+	View
PT07G00680	No description available.	Chr07	-	View
PT09G08560	No description available.	Chr09	+	View
PT02G11630	No description available.	Chr02	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G092110	Phytosulfokines 3 (AHRD V1 ***- PSK3_ARATH)%3B contains Interpro domain(s) IPR009438 Phytosulfokine	ch02	+	View
SL01G106830	Phytosulfokines 4 (AHRD V1 -- B6UIM4_MAIZE)%3B contains Interpro domain(s) IPR009438 Phytosulfokine	ch01	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV18G05660	name=GSVIVG01009309001;	chr18	+	View