Anchorpoints

Gene id
AT3G46510
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G28830PLANT U-BOX 12 (PUB12); FUNCTIONS IN: ubiquitin-protein ligase activity, structural constituent of ribosome, rRNA binding, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex, ribosome, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L16 (InterPro:IPR000114), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Ribosomal protein L10e/L16 (InterPro:IPR016180), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Ribosomal protein L16, conserved site (InterPro:IPR020798); BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1); Has 16927 Blast hits to 15027 proteins in 4135 species: Archae - 0; Bacteria - 5491; Metazoa - 1535; Fungi - 908; Plants - 5936; Viruses - 3; Other Eukaryotes - 3054 (source: NCBI BLink). Encodes a U-box E3 ubiquitin ligase involved in ubiquitination of pattern recognition receptor FLS2. PLANT U-BOX 122-View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G66610No description available.Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00081G01700No description available.supercontig_81+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G16824spotted leaf 11, putative, expressed3+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G15220No description available.Chr03+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT09G02960No description available.Chr09-View
PT01G23850No description available.Chr01-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI009G46600No description available.scaffold_9-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G066040U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH)%3B contains Interpro domain(s) IPR011989 Armadillo-like helicalch11+View
SL06G076040U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY)%3B contains Interpro domain(s) IPR011989 Armadillo-like helicalch06-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G03770name=GSVIVG01024985001;chr6-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G11340No description available.1+View


Download

Gene id
Species
Description
Chromosome
Strand