PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT3G29035
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G39610	Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510. NAC domain containing protein 6 (NAC6); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 3 (TAIR:AT3G29035.1); Has 3041 Blast hits to 3034 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3041; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). NAC domain containing protein 6	5	-	View
AT1G69490	Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. NAC-like, activated by AP3/PI NAC-like, activated by AP3/PI (NAP); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 25 (TAIR:AT1G61110.1); Has 3046 Blast hits to 3040 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3046; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	1	+	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00001G00490	No description available.	supercontig_1	-	View
CP00014G00990	No description available.	supercontig_14	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT17G08620	No description available.	Chr17	+	View
PT08G08900	No description available.	Chr08	-	View
PT10G16620	No description available.	Chr10	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G115850	NAC domain protein IPR003441 (AHRD V1 ***- B9I557_POPTR)%3B contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein	ch03	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV17G03510	name=GSVIVG01007982001;	chr17	+	View