PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT3G02230
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G15650	reversibly glycosylated polypeptide 2 reversibly glycosylated polypeptide 2 (RGP2); FUNCTIONS IN: transferase activity, transferring hexosyl groups, glycogenin glucosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cytosolic ribosome, cell wall, membrane; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, leaf; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1); Has 259 Blast hits to 255 proteins in 45 species: Archae - 24; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). RGP2 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It appears to be required for proper cell wall formation. rgp1(at3g02230)/rgp2 double mutants have a male gametophyte lethal phenotype. RGP2 fusion proteins can be found in the cytosol and peripherally associated with the Golgi apparatus. RGP2 was originally identified as Reversibly Glycosylated Polypeptide-2. Constitutive expression in tobacco impairs plant development and virus spread.	5	+	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD1G21990	No description available.	Bd1	-	View
BD2G50660	No description available.	Bd2	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00014G02130	No description available.	supercontig_14	+	View
CP00001G01540	No description available.	supercontig_1	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB03G035320	No description available.	chr_3	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G089170	Alpha-1 4-glucan-protein synthase (AHRD V1 *- B9RLK7_RICCO)%3B contains Interpro domain(s) IPR004901 Alpha-1%2C4-glucan-protein synthase%2C UDP-forming	ch02	+	View
SL03G114860	Alpha-1 4-glucan-protein synthase (AHRD V1 *- B9RLK7_RICCO)%3B contains Interpro domain(s) IPR004901 Alpha-1%2C4-glucan-protein synthase%2C UDP-forming	ch03	-	View
SL02G065740	Alpha-1 4-glucan-protein synthase (UDP-forming) (AHRD V1 *- Q2HV87_MEDTR)%3B contains Interpro domain(s) IPR004901 Alpha-1%2C4-glucan-protein synthase%2C UDP-forming	ch02	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV17G04800	name=GSVIVG01008133001;	chr17	-	View
VV14G16160	name=GSVIVG01036557001;	chr14	-	View