Anchorpoints

Gene id
AT2G40370
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G30210laccase 3 putative laccase, a member of laccase family of genes (17 members in Arabidopsis). laccase 3 (LAC3); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: hypocotyl, fruit, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 13 (TAIR:AT5G07130.1); Has 11124 Blast hits to 9161 proteins in 1586 species: Archae - 42; Bacteria - 5039; Metazoa - 506; Fungi - 3547; Plants - 1577; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).2-View
AT5G05390putative laccase, a member of laccase family of genes (17 members in Arabidopsis). laccase 12 laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD2G53800No description available.Bd2+View
BD1G65100No description available.Bd1-View
BD4G44810No description available.Bd4+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00019G01210No description available.supercontig_19+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS11G01730laccase-23 precursor, putative, expressed Putative laccase-1711+View
OS03G18640laccase precursor protein, putative, expressed3+View
OS01G61160laccase precursor protein, putative, expressed Laccase-31+View
OS12G01730laccase-23 precursor, putative, expressed Laccase-2312+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G17400No description available.Chr03+View
OSINDICA_01G57800No description available.Chr01+View
OSINDICA_12G00860No description available.Chr12+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G06400No description available.Chr08+View
PT10G18350No description available.Chr10+View
PT16G11200No description available.Chr16+View
PT08G07370No description available.Chr08-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G038550No description available.chr_3+View
SB01G038130No description available.chr_1-View
SB08G000720No description available.chr_8+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI005G37400No description available.scaffold_5+View
SI009G45020No description available.scaffold_9-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL05G052340Laccase (AHRD V1 ***- Q9ZP47_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech05-View
SL06G048860Laccase (AHRD V1 ***- Q9ZP47_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech06+View
SL06G050530Laccase (AHRD V1 ***- Q9ZP47_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech06-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G00980name=GSVIVG01024634001;chr6-View
VV13G09850name=GSVIVG01032744001;chr13-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM03G28090L-ascorbate oxidase3-View
ZM01G12650No description available.1+View


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Gene id
Species
Description
Chromosome
Strand