Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AT2G39620
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G37310 | Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 41005 Blast hits to 14175 proteins in 268 species: Archae - 2; Bacteria - 17; Metazoa - 83; Fungi - 122; Plants - 40263; Viruses - 0; Other Eukaryotes - 518 (source: NCBI BLink). Pentatricopeptide repeat (PPR) superfamily protein | 2 | - | View |
Orthologs (inter-species colinear regions)
Brachypodium distachyon
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BD1G66810 | No description available. | Bd1 | - | View |
Musa acuminata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MA10G23220 | CC_gene:PCMP-H40,CC_gene:PCMP-H45,CC_gene:PCMP-H41,CC_gene:PCMP-H18,CC_gene:PCMP-H56,CC_gene:PCMP-H69,CC_gene:PCMP-H24,CC_gene:PCMP-H8,CC_functional_completeness:complete,PRODUCT:Putative Pentatricopeptide repeat-containing protein At1g18485,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr10 | + | View |
| MA02G16540 | CC_gene:PCMP-H45,CC_gene:PCMP-H85,CC_gene:PCMP-H90,CC_gene:PCMP-H36,CC_gene:PCMP-H44,CC_gene:PCMP-E90,CC_gene:PCMP-H87,CC_gene:PCMP-E102,CC_functional_completeness:complete,PRODUCT:Putative Pentatricopeptide repeat-containing protein At5g42450%2C mitochondrial,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr2 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT08G05220 | No description available. | Chr08 | + | View |
| PT16G08220 | No description available. | Chr16 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL09G005710 | Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY)%3B contains Interpro domain(s) IPR002885 Pentatricopeptide repeat | ch09 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV13G05640 | name=GSVIVG01016592001; | chr13 | + | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM01G11100 | No description available. | 1 | + | View |