Anchorpoints

Gene id
AT2G38080
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G58910laccase 16 laccase 16 (LAC16); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Laccase (InterPro:IPR017761), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). putative laccase, a member of laccase family of genes (17 members in Arabidopsis).5-View


Orthologs (inter-species colinear regions)

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00019G02140No description available.supercontig_19-View
CP00056G01000No description available.supercontig_56+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT09G04250No description available.Chr09+View
PT01G24870No description available.Chr01+View
PT10G19310No description available.Chr10-View
PT08G06400No description available.Chr08+View
PT06G09410No description available.Chr06+View
PT16G11200No description available.Chr16+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI005G39170No description available.scaffold_5+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G076830Laccase 1a (AHRD V1 ***- B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech10-View
SL10G085090Laccase 1a (AHRD V1 **** B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech10+View
SL09G011960Laccase (AHRD V1 ***- O24042_LIRTU)%3B contains Interpro domain(s) IPR017761 Laccasech09+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G13250name=GSVIVG01034003001;chr8+View
VV13G03930name=GSVIVG01016372001;chr13+View
VV06G02270name=GSVIVG01024795001;chr6+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM03G26820laccase 13-View


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Gene id
Species
Description
Chromosome
Strand