PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT2G23050
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G67385	Phototropic-responsive NPH3 family protein Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G49970.1); Has 920 Blast hits to 899 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 39; Fungi - 6; Plants - 863; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).	5	+	View
AT4G37590	NAKED PINS IN YUC MUTANTS 5 (NPY5); FUNCTIONS IN: signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT2G23050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Phototropic-responsive NPH3 family protein A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	4	-	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00006G00330	No description available.	supercontig_6	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA05G01750	CC_gene:KLHL28,CC_gene:Klhl28,CC_gene:ZBTB37,CC_gene:RPT3,CC_gene:RPT2,CC_gene:CPT1,CC_gene:At5g48800,CC_gene:At1g30440,CC_functional_completeness:complete,PRODUCT:BTBN7 - Bric-a-Brac%2C Tramtrack%2C Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain%2C expressed,GO:0009416,GO:0005515,GO:0004871,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr5	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS03G10800	BTBN4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed	3	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_03G09280	No description available.	Chr03	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT09G08950	No description available.	Chr09	+	View
PT01G29560	No description available.	Chr01	+	View
PT05G14640	No description available.	Chr05	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G044090	Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY)%3B contains Interpro domain(s) IPR004249 NPH3	ch03	+	View
SL01G107180	Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY)%3B contains Interpro domain(s) IPR004249 NPH3	ch01	+	View
SL02G092480	Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY)%3B contains Interpro domain(s) IPR004249 NPH3	ch02	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV03G09990	name=GSVIVG01037852001;	chr3	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM09G26380	No description available.	9	-	View