Anchorpoints

Gene id
AT2G20650
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G28370RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20650.2); Has 309 Blast hits to 308 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 25; Plants - 165; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). Encodes an E3 ubiquitin ligase that is involved in plant cell wall modification, seed mucilage extrusion, and controls the degree of pectin methylesterification in seed mucilage. It is located in the endomembrane system, likely localized in late endosome/multivesicular bodies/prevacular compartment. It has been shown to ubiquitinate proteins in conjunction with UBA1 and UBC8. RING/U-box superfamily protein4+View


Orthologs (inter-species colinear regions)

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G01260No description available.Chr17+View
PT07G13930No description available.Chr07-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL07G053850Zinc finger (C3HC4 RING finger) protein (AHRD V1 *--- B9PQV1_TOXGO)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-typech07-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV12G01750name=GSVIVG01020571001;chr12-View


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Gene id
Species
Description
Chromosome
Strand