PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT2G17760
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G51330	Eukaryotic aspartyl protease family protein Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G51350.1); Has 2269 Blast hits to 2259 proteins in 198 species: Archae - 0; Bacteria - 13; Metazoa - 189; Fungi - 203; Plants - 1703; Viruses - 2; Other Eukaryotes - 159 (source: NCBI BLink).	3	-	View
AT4G35880	Eukaryotic aspartyl protease family protein Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G17760.1); Has 2412 Blast hits to 2405 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 331; Fungi - 271; Plants - 1693; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).	4	+	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD4G36720	No description available.	Bd4	-	View
BD3G61060	No description available.	Bd3	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00006G02990	No description available.	supercontig_6	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA02G03580	CC_gene:Ctsd,CC_gene:nep1,CC_gene:ASP1,CC_gene:nep2,CC_gene:At1g65240,CC_gene:At5g10080,CC_functional_completeness:modules,PRODUCT:Putative Aspartic proteinase-like protein 1,GO:0006508,GO:0004190,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr2	-	View
MA06G27380	CC_gene:PGA,CC_gene:ASP1,CC_gene:At5g10080,CC_gene:At1g65240,CC_gene:nep1,CC_gene:nep2,CC_functional_completeness:complete,PRODUCT:Putative Aspartic proteinase nepenthesin-2,GO:0006508,GO:0004190,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr6	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT05G10870	No description available.	Chr05	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G083450	Aspartic proteinase-like protein 1 (AHRD V1 **-- ASPL1_ARATH)%3B contains Interpro domain(s) IPR001461 Peptidase A1	ch02	+	View
SL03G033360	Aspartic proteinase nepenthesin II-like (AHRD V1 **-- Q651C2_ORYSJ)%3B contains Interpro domain(s) IPR001461 Peptidase A1	ch03	+	View