PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT2G01570
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G14920	GIBBERELLIC ACID INSENSITIVE (GAI); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT2G01570.1); Has 2718 Blast hits to 2657 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. GRAS family transcription factor family protein	1	+	View
AT1G66350	RGA-like 1 (RGL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like 2 (TAIR:AT3G03450.1); Has 2708 Blast hits to 2634 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2704; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. RGA-like 1	1	+	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00002G02260	No description available.	supercontig_2	+	View
CP00116G00430	No description available.	supercontig_116	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA01G23330	CC_gene:SCL5,CC_gene:CIGR2,CC_gene:SCL21,CC_gene:SHR,CC_gene:SHR2,CC_gene:SHR1,CC_functional_completeness:complete,PRODUCT:Protein SHORT-ROOT 1,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr1	+	View
MA08G31710	CC_gene:SCL5,CC_gene:CIGR2,CC_gene:SCL21,CC_gene:SHR,CC_gene:SHR2,CC_gene:SHR1,CC_functional_completeness:complete,PRODUCT:Protein SHORT-ROOT 1,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr8	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT17G12520	No description available.	Chr17	+	View
PT10G11070	No description available.	Chr10	+	View
PT04G08980	No description available.	Chr04	-	View
PT08G13170	No description available.	Chr08	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL11G011260	GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI)%3B contains Interpro domain(s) IPR005202 GRAS transcription factor DELLA protein GAI	ch11	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV14G06420	name=GSVIVG01030735001;	chr14	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM01G51250	No description available.	1	+	View