Anchorpoints

Gene id
AT1G77000
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G21410F-box/RNI-like superfamily protein SKP2A; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G77000.2); Has 8874 Blast hits to 3879 proteins in 263 species: Archae - 0; Bacteria - 386; Metazoa - 3510; Fungi - 1080; Plants - 2969; Viruses - 9; Other Eukaryotes - 920 (source: NCBI BLink). AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.1+View


Orthologs (inter-species colinear regions)

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G18570No description available.Chr05+View
PT02G07470No description available.Chr02-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G063380F-box/LRR-repeat protein 2 (AHRD V1 ***- B6TAC3_MAIZE)%3B contains Interpro domain(s) IPR006553 Leucine-rich repeat%2C cysteine-containing subtypech04+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G11240name=GSVIVG01009981001;chr18+View


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Gene id
Species
Description
Chromosome
Strand