PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT1G63470
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G61310	AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G45850.2); Has 861 Blast hits to 857 proteins in 59 species: Archae - 0; Bacteria - 6; Metazoa - 83; Fungi - 11; Plants - 756; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). AT hook motif DNA-binding family protein	3	-	View
AT2G45850	AT hook motif DNA-binding family protein AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT3G61310.1); Has 793 Blast hits to 789 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 13; Plants - 747; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).	2	-	View

Orthologs (inter-species colinear regions)

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA11G04050	CC_gene:glmU,CC_gene:ESC,CC_functional_completeness:complete,PRODUCT:Putative AT hook motif domain containing protein%2C expressed,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr11	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS04G58730	AT hook motif domain containing protein, expressed	4	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT14G08210	No description available.	Chr14	-	View
PT03G12650	No description available.	Chr03	-	View
PT02G15820	No description available.	Chr02	-	View
PT01G10490	No description available.	Chr01	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL08G008030	AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA)%3B contains Interpro domain(s) IPR005175 Protein of unknown function DUF296	ch08	-	View
SL01G094460	AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA)%3B contains Interpro domain(s) IPR005175 Protein of unknown function DUF296	ch01	-	View
SL08G080960	AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA)%3B contains Interpro domain(s) IPR005175 Protein of unknown function DUF296	ch08	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV15G04630	name=GSVIVG01026888001;	chr15	+	View
VV02G06540	name=GSVIVG01019763001;	chr2	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM02G00130	No description available.	2	+	View