PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT1G63250
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G61240	DEA(D/H)-box RNA helicase family protein DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 53038 Blast hits to 46572 proteins in 3157 species: Archae - 705; Bacteria - 22269; Metazoa - 8742; Fungi - 5746; Plants - 2904; Viruses - 84; Other Eukaryotes - 12588 (source: NCBI BLink).	3	+	View
AT1G12770	embryo defective 1586 (EMB1586); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: plasmodesma organization, plasmodesmata-mediated intercellular transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: embryo, root, flower, shoot meristem; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 38833 Blast hits to 38121 proteins in 2993 species: Archae - 753; Bacteria - 18819; Metazoa - 5837; Fungi - 4441; Plants - 2445; Viruses - 12; Other Eukaryotes - 6526 (source: NCBI BLink). Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata. P-loop containing nucleoside triphosphate hydrolases superfamily protein	1	+	View

Orthologs (inter-species colinear regions)

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA05G12530	CC_gene:DHH1,CC_gene:ddx6,CC_gene:RH12,CC_gene:RH6,CC_gene:Os10g0503700,CC_gene:RH8,CC_gene:Os02g0641800,CC_gene:Os04g0533000,CC_functional_completeness:complete,PRODUCT:DEAD-box ATP-dependent RNA helicase 6,GO:0008026,GO:0005524,GO:0004386,GO:0003676,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr5	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G10730	No description available.	Chr01	+	View
PT03G12360	No description available.	Chr03	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL12G056340	ATP-dependent RNA helicase (AHRD V1 -- A3RR99_RALSO)%3B contains Interpro domain(s) IPR011545 DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal	ch12	+	View