PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT1G32230
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G35510	similar to RCD one 1 (SRO1); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: WWE protein-protein interaction domain protein family (TAIR:AT1G32230.3); Has 207 Blast hits to 202 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. similar to RCD one 1	2	-	View

Orthologs (inter-species colinear regions)

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT03G09670	No description available.	Chr03	+	View
PT01G13720	No description available.	Chr01	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI009G31800	No description available.	scaffold_9	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL08G076420	Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ)%3B contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase%2C catalytic region	ch08	-	View
SL08G005270	Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ)%3B contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase%2C catalytic region	ch08	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV02G01830	name=GSVIVG01013090001;	chr2	+	View