Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AT1G30100
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT4G18350 | nine-cis-epoxycarotenoid dioxygenase 2 (NCED2); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 5 (TAIR:AT1G30100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). nine-cis-epoxycarotenoid dioxygenase 2 Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. | 4 | + | View |
Orthologs (inter-species colinear regions)
Brachypodium distachyon
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BD1G58580 | No description available. | Bd1 | + | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00246G00030 | No description available. | supercontig_246 | - | View |
Musa acuminata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MA04G32390 | CC_evidence:curated,CC_evidence_code:IC,CC_status:in_progress,CC_gene:CCD,CC_gene:NCED6,CC_gene:NCED2,CC_gene:NCED9,CC_gene:NCED3,CC_gene:NCED5,CC_gene:NCED1,CC_gene:VP14,CC_functional_completeness:complete,PRODUCT:9-cis-epoxycarotenoid dioxygenase 1%2C chloroplastic,CC_EC_number:no_EC_number | chr4 | - | View |
| MA07G01270 | CC_evidence:curated,CC_EC_number:1.13.11.51,CC_evidence_code:IC_2a,CC_status:in_progress,CC_gene:NCED1,CC_functional_completeness:complete,PRODUCT:9-cis-epoxycarotenoid dioxygenase 1%2C chloroplastic,CC_EC_number:no_EC_number | chr7 | + | View |
| MA05G02670 | CC_evidence:curated,CC_evidence_code:IC_2a,CC_status:in_progress,CC_EC_number:1.13.11.51,CC_gene:NCED1,CC_functional_completeness:complete,PRODUCT:9-cis-epoxycarotenoid dioxygenase 1%2C chloroplastic,CC_EC_number:no_EC_number | chr5 | + | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS07G05940 | 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed | 7 | + | View |
Oryza sativa ssp. indica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OSINDICA_07G04570 | No description available. | Chr07 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT11G08410 | No description available. | Chr11 | - | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB02G003230 | No description available. | chr_2 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV10G04440 | name=GSVIVG01021507001; | chr10 | + | View |