Anchorpoints

Gene id
AT1G22190
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G78080Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink). related to AP2 41+View
AT1G72360Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 (HRE1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6097 Blast hits to 5793 proteins in 253 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6054; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein1+View
AT4G39780encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G22200.1); Has 5858 Blast hits to 5712 proteins in 253 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5812; Viruses - 11; Other Eukaryotes - 25 (source: NCBI BLink).4-View
AT1G36060Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 6040 Blast hits to 5770 proteins in 261 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 5982; Viruses - 4; Other Eukaryotes - 47 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.1-View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G58980No description available.Bd3-View
BD1G45470No description available.Bd1+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00036G01100No description available.supercontig_36+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA10G31210CC_gene:ERF053,CC_gene:ERF062,CC_gene:ERF057,CC_gene:ERF056,CC_gene:ERF055,CC_gene:ERF060,CC_gene:ERF058,CC_gene:RAP2-4,CC_functional_completeness:complete,PRODUCT:Putative DRF-like transcription factor DRFL2a,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View
MA03G04400CC_gene:ERF053,CC_gene:ERF062,CC_gene:ERF056,CC_gene:ERF057,CC_gene:ERF055,CC_gene:RAP2-4,CC_gene:ERF060,CC_gene:ERF058,CC_functional_completeness:fragment,PRODUCT:Putative Ethylene-responsive transcription factor ERF058,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr3-View
MA09G13220CC_gene:ERF053,CC_gene:ERF062,CC_gene:ERF055,CC_gene:ERF056,CC_gene:ERF057,CC_gene:ERF058,CC_gene:ERF060,CC_gene:RAP2-4,CC_functional_completeness:modules,PRODUCT:Putative Ethylene-responsive transcription factor RAP2-4,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr9-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G51670ethylene-responsive transcription factor, putative, expressed2+View
OS06G11860ethylene-responsive transcription factor, putative, expressed6-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_06G11280No description available.Chr06-View
OSINDICA_02G49910No description available.Chr02+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G09420No description available.Chr02+View
PT05G16870No description available.Chr05+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB04G027660No description available.chr_4-View
SB01G044410No description available.chr_1+View
SB10G007780No description available.chr_10-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI004G09240No description available.scaffold_4-View
SI009G52570No description available.scaffold_9+View
SI001G33620No description available.scaffold_1+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G056980Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch12+View
SL04G072900Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch04+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G03340name=GSVIVG01009007001;chr18+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G40750LOC1002805535+View
ZM01G06490No description available.1-View
ZM04G27660No description available.4-View


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Gene id
Species
Description
Chromosome
Strand