Anchorpoints
- Gene id
- AT1G22190
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G78080 | Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink). related to AP2 4 | 1 | + | View |
AT1G72360 | Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 (HRE1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6097 Blast hits to 5793 proteins in 253 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6054; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein | 1 | + | View |
AT4G39780 | encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G22200.1); Has 5858 Blast hits to 5712 proteins in 253 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5812; Viruses - 11; Other Eukaryotes - 25 (source: NCBI BLink). | 4 | - | View |
AT1G36060 | Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 6040 Blast hits to 5770 proteins in 261 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 5982; Viruses - 4; Other Eukaryotes - 47 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. | 1 | - | View |
Orthologs (inter-species colinear regions)
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD3G58980 | No description available. | Bd3 | - | View |
BD1G45470 | No description available. | Bd1 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00036G01100 | No description available. | supercontig_36 | + | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA10G31210 | CC_gene:ERF053,CC_gene:ERF062,CC_gene:ERF057,CC_gene:ERF056,CC_gene:ERF055,CC_gene:ERF060,CC_gene:ERF058,CC_gene:RAP2-4,CC_functional_completeness:complete,PRODUCT:Putative DRF-like transcription factor DRFL2a,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr10 | - | View |
MA03G04400 | CC_gene:ERF053,CC_gene:ERF062,CC_gene:ERF056,CC_gene:ERF057,CC_gene:ERF055,CC_gene:RAP2-4,CC_gene:ERF060,CC_gene:ERF058,CC_functional_completeness:fragment,PRODUCT:Putative Ethylene-responsive transcription factor ERF058,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr3 | - | View |
MA09G13220 | CC_gene:ERF053,CC_gene:ERF062,CC_gene:ERF055,CC_gene:ERF056,CC_gene:ERF057,CC_gene:ERF058,CC_gene:ERF060,CC_gene:RAP2-4,CC_functional_completeness:modules,PRODUCT:Putative Ethylene-responsive transcription factor RAP2-4,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr9 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS02G51670 | ethylene-responsive transcription factor, putative, expressed | 2 | + | View |
OS06G11860 | ethylene-responsive transcription factor, putative, expressed | 6 | - | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_06G11280 | No description available. | Chr06 | - | View |
OSINDICA_02G49910 | No description available. | Chr02 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G09420 | No description available. | Chr02 | + | View |
PT05G16870 | No description available. | Chr05 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB04G027660 | No description available. | chr_4 | - | View |
SB01G044410 | No description available. | chr_1 | + | View |
SB10G007780 | No description available. | chr_10 | - | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI004G09240 | No description available. | scaffold_4 | - | View |
SI009G52570 | No description available. | scaffold_9 | + | View |
SI001G33620 | No description available. | scaffold_1 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL12G056980 | Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch12 | + | View |
SL04G072900 | Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch04 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G03340 | name=GSVIVG01009007001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM05G40750 | LOC100280553 | 5 | + | View |
ZM01G06490 | No description available. | 1 | - | View |
ZM04G27660 | No description available. | 4 | - | View |