PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT1G20590
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G17620	Cyclin B2;1 (CYCB2;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;2 (TAIR:AT4G35620.1); Has 4386 Blast hits to 4385 proteins in 373 species: Archae - 0; Bacteria - 0; Metazoa - 1994; Fungi - 552; Plants - 1134; Viruses - 37; Other Eukaryotes - 669 (source: NCBI BLink). Cyclin B2;1	2	+	View
AT4G35620	Cyclin B2;2 (CYCB2;2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;1 (TAIR:AT2G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Cyclin B2;2	4	+	View
AT1G76310	CYCLIN B2;4 CYCLIN B2;4 (CYCB2;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink). core cell cycle genes	1	-	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD5G18397	No description available.	Bd5	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA05G19640	CC_gene:CYCB2-3,CC_gene:CYCB2-4,CC_gene:CYCB2-1,CC_gene:CYCB2-2,CC_functional_completeness:complete,PRODUCT:Cyclin-B2-2,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr5	-	View
MA08G13750	CC_gene:CYCB2-3,CC_gene:CYCB2-4,CC_gene:CYCB2-1,CC_gene:CYCB2-2,CC_functional_completeness:complete,PRODUCT:Cyclin-B2-2,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr8	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS04G47580	Cyclin-B2-1 cyclin, putative, expressed	4	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_04G39770	No description available.	Chr04	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT05G10000	No description available.	Chr05	-	View
PT02G01000	No description available.	Chr02	+	View
PT05G25140	No description available.	Chr05	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB06G025380	No description available.	chr_6	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI007G20540	No description available.	scaffold_7	-	View
SI004G29550	No description available.	scaffold_4	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G082820	Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC)%3B contains Interpro domain(s) IPR014400 Cyclin%2C A/B/D/E IPR006671 Cyclin%2C N-terminal	ch02	+	View
SL12G094600	Cyclin B (AHRD V1 **** B6V744_POPTO)%3B contains Interpro domain(s) IPR014400 Cyclin%2C A/B/D/E	ch12	-	View
SL04G082430	B-like cyclin (AHRD V1 **** Q40337_MEDSA)%3B contains Interpro domain(s) IPR014400 Cyclin%2C A/B/D/E	ch04	-	View
SL03G032190	Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC)%3B contains Interpro domain(s) IPR014400 Cyclin%2C A/B/D/E	ch03	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM02G07050	cyclin B2	2	+	View