Anchorpoints
- Gene id
- AT1G14685
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G01930 | BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant. basic pentacysteine1 basic pentacysteine1 (BPC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 2 (TAIR:AT1G14685.1); Has 220 Blast hits to 218 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 2 | - | View |
Orthologs (inter-species colinear regions)
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00002G01130 | No description available. | supercontig_2 | + | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA06G11670 | CC_gene:hunk,CC_gene:CHDH,CC_gene:Scarf2,CC_gene:PDS5B,CC_gene:REM19,CC_gene:rpoC,CC_functional_completeness:complete,PRODUCT:GAGA-binding protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr6 | + | View |
MA02G22240 | CC_gene:hunk-a,CC_gene:APC1,CC_gene:aor,CC_gene:PIM1,CC_gene:FGFR1,CC_functional_completeness:fragment,PRODUCT:GAGA-binding protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr2 | + | View |
MA09G16160 | CC_functional_completeness:complete,PRODUCT:Putative Whole genome shotgun sequence of line PN40024%2C scaffold_11.assembly12x (Fragment),CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr9 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT08G14020 | No description available. | Chr08 | - | View |
PT15G03280 | No description available. | Chr15 | - | View |
PT10G10140 | No description available. | Chr10 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI009G49140 | No description available. | scaffold_9 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G008380 | GAGA-binding transcriptional activator (AHRD V1 ***- D7KCI3_ARALY)%3B contains Interpro domain(s) IPR010409 GAGA binding-like | ch04 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV01G05300 | name=GSVIVG01011589001; | chr1 | - | View |