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Functional clusters
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WorkbenchAnchorpoints
- Gene id
- AT1G13130
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT3G26130 | Cellulase (glycosyl hydrolase family 5) protein Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, male gametophyte, root, flower; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT1G13130.1); Has 429 Blast hits to 420 proteins in 135 species: Archae - 0; Bacteria - 200; Metazoa - 0; Fungi - 95; Plants - 114; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | 3 | - | View |
Orthologs (inter-species colinear regions)
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00033G00590 | No description available. | supercontig_33 | + | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS02G38260 | glycosyl hydrolase family 5 protein, putative, expressed | 2 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT10G04970 | No description available. | Chr10 | + | View |
| PT08G18340 | No description available. | Chr08 | - | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB04G024910 | No description available. | chr_4 | + | View |
Setaria italica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SI007G14560 | No description available. | scaffold_7 | + | View |
| SI001G22950 | No description available. | scaffold_1 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL05G013810 | Glycosyl hydrolase family 5 protein/cellulase (AHRD V1 **-- A8NVS8_COPC7)%3B contains Interpro domain(s) IPR001547 Glycoside hydrolase%2C family 5 | ch05 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV01G00340 | name=GSVIVG01000573001; | chr1 | - | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM02G12180 | No description available. | 2 | - | View |