PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT1G04610
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G33230	YUCCA 7 (YUC7); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: YUCCA 3 (TAIR:AT1G04610.1); Has 9342 Blast hits to 9320 proteins in 1117 species: Archae - 14; Bacteria - 4686; Metazoa - 781; Fungi - 1476; Plants - 662; Viruses - 0; Other Eukaryotes - 1723 (source: NCBI BLink). YUCCA 7 Encodes a flavin monooxygenase gene which belongs to the tryptophan-dependent auxin biosynthetic pathway and enhances drought resistance.	2	-	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00059G00550	No description available.	supercontig_59	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA11G02340	CC_gene:FMO3,CC_gene:FMO4,CC_gene:FMO5,CC_gene:FMO6P,CC_functional_completeness:complete,PRODUCT:flavin monooxygenase%2C putative%2C expressed,GO:0055114,GO:0050661,GO:0050660,GO:0004499,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr11	+	View
MA08G13250	CC_gene:FMO3,CC_gene:FMO5,CC_gene:FMO4,CC_gene:Fmo3,CC_gene:Fmo4,CC_gene:FMO6P,CC_functional_completeness:complete,PRODUCT:flavin monooxygenase%2C putative%2C expressed,GO:0055114,GO:0050661,GO:0050660,GO:0004499,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:1.14.13.8	chr8	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT08G17460	No description available.	Chr08	+	View
PT10G06240	No description available.	Chr10	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G083700	Monooxygenase (AHRD V1 **** D5ZV09_9ACTO)%3B contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase%2C class-II	ch06	-	View
SL09G091090	Monooxygenase (AHRD V1 **** D5ZV09_9ACTO)%3B contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase%2C class-II	ch09	+	View