PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT1G03020
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G15660	Thioredoxin superfamily protein Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G15670.1); Has 1520 Blast hits to 1515 proteins in 222 species: Archae - 0; Bacteria - 20; Metazoa - 424; Fungi - 241; Plants - 751; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).	4	+	View
AT3G62930	Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G03020.1); Has 1393 Blast hits to 1390 proteins in 224 species: Archae - 0; Bacteria - 15; Metazoa - 320; Fungi - 249; Plants - 741; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). Thioredoxin superfamily protein	3	-	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00009G01730	No description available.	supercontig_9	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA07G03770	CC_gene:GRXC11,CC_gene:GRXC13,CC_gene:GRXS8,CC_gene:GRXC15,CC_gene:GRXC2,CC_gene:GRXC1,CC_gene:GRXC14,CC_functional_completeness:complete,PRODUCT:Putative glutaredoxin-C14,GO:0045454,GO:0015035,GO:0009055,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr7	+	View
MA01G27800	CC_gene:GRXC10,CC_gene:GRXC13,CC_gene:GRXC11,CC_gene:GRXS8,CC_gene:GRXC15,CC_gene:GRXC2,CC_gene:GRXC14,CC_gene:GRXC1,CC_functional_completeness:complete,PRODUCT:Glutaredoxin-C1,GO:0045454,GO:0015035,GO:0009055,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr1	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS01G70990	Putative glutaredoxin-C2 OsGrx_C6 - glutaredoxin subgroup III, expressed	1	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT14G13370	No description available.	Chr14	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL09G074570	Glutaredoxin (AHRD V1 **** B3F8F2_SOLTU)%3B contains Interpro domain(s) IPR011905 Glutaredoxin-like%2C plant II	ch09	-	View