Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SL04G076040
(Solanum lycopersicum)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Solanum lycopersicum | Orthologous gene family | SL04G076040 | 1 |  |
| Anchor point | SL12G087900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | SL04G076040 | 1 | ||
| Tree-based ortholog | SL12G087900 SL04G076040 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Anchor point | 1-to-1 | AT5G65420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT2G22490 | 1 | ||
| Tree-based ortholog | many-to-many | AT2G22490 AT5G65420 AT5G10440 | 3 | ||
| Brachypodium distachyon | Anchor point | 1-to-many | BD3G58300 BD3G38417 BD4G32556 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BD4G32556 | 1 | ||
| Tree-based ortholog | many-to-many | BD3G38417 BD4G32556 BD3G58300 | 3 | ||
| Carica papaya | Anchor point | 1-to-many | CP00055G00360 CP00309G00080 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00309G00080 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00309G00080 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR06G11100 CR06G09980 CR11G02450 | 3 | |
| Tree-based ortholog | many-to-many | CR06G09980 CR11G02450 CR09G11330 | 3 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HV52689G00010 | 1 | |
| Tree-based ortholog | many-to-many | HV52689G00010 HV37233G00010 | 2 | ||
| Musa acuminata | Anchor point | 1-to-many | MA10G25530 MA09G15450 MA06G10520 ... | 6 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MA05G23540 MA05G18440 MA10G25530 ... | 12 | ||
| Tree-based ortholog | many-to-many | MA10G31020 MA05G23540 MA06G02240 ... | 14 | ||
| Oryza sativa ssp. indica | Orthologous gene family | 1-to-1 | OSINDICA_09G23310 | 1 | |
| Anchor point | 1-to-1 | OSINDICA_09G23310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OSINDICA_09G23310 | 1 | ||
| Tree-based ortholog | many-to-many | OSINDICA_08G35650 OSINDICA_09G23310 OSINDICA_06G10870 | 3 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-1 | OS09G29100 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS09G29100 | 1 | ||
| Tree-based ortholog | many-to-many | OS08G37390 OS09G29100 OS06G11410 | 3 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL17G01620 | 1 | |
| Tree-based ortholog | many-to-many | OL17G01620 OL01G06150 | 2 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-many | PP00024G00880 PP00359G00110 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00359G00110 PP00024G00880 | 2 | ||
| Tree-based ortholog | many-to-many | PP00024G00880 PP00359G00110 | 2 | ||
| Populus trichocarpa | Anchor point | 1-to-many | PT05G15780 PT02G10350 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT02G10350 PT05G15780 | 2 | ||
| Tree-based ortholog | many-to-many | PT02G10350 PT05G15780 | 2 | ||
| Setaria italica | Anchor point | 1-to-many | SI002G24250 SI006G18490 SI001G34080 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SI006G18490 | 1 | ||
| Tree-based ortholog | many-to-many | SI006G18490 SI002G24250 SI004G08770 ... | 4 | ||
| Sorghum bicolor | Orthologous gene family | 1-to-1 | SB02G027020 | 1 | |
| Anchor point | 1-to-many | SB04G033870 SB02G027020 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SB04G033870 | 1 | ||
| Tree-based ortholog | many-to-many | SB07G023350 SB02G027020 SB10G007450 ... | 4 | ||
| Vitis vinifera | Anchor point | 1-to-many | VV18G04300 VV00G06850 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G04300 | 1 | ||
| Tree-based ortholog | many-to-1 | VV18G04300 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-1 | ZM07G16590 | 1 | |
| Anchor point | 1-to-many | ZM07G16590 ZM02G31970 ZM04G27270 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM07G16590 | 1 | ||
| Tree-based ortholog | many-to-many | ZM01G35510 ZM10G25140 ZM08G23320 ... | 7 |