Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SI009G45960
(Setaria italica)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Setaria italica | Orthologous gene family | SI009G45960 | 1 |  |
| Anchor point | SI002G45380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | SI009G45960 | 1 | ||
| Tree-based ortholog | SI009G45970 SI009G45960 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Anchor point | 1-to-many | AT3G55040 AT5G02780 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G55040 | 1 | ||
| Tree-based ortholog | many-to-many | AT5G02780 AT5G02790 AT3G55040 | 3 | ||
| Brachypodium distachyon | Anchor point | 1-to-1 | BD1G66020 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BD1G66020 | 1 | ||
| Tree-based ortholog | many-to-1 | BD1G66020 | 1 | ||
| Carica papaya | Anchor point | 1-to-many | CP00114G00340 CP00001G02830 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CP00114G00360 CP00114G00350 | 2 | ||
| Tree-based ortholog | many-to-many | CP00001G02830 CP00114G00350 CP00114G00340 ... | 4 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR01G09680 | 1 | |
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HV1561504G00010 | 1 | |
| Tree-based ortholog | many-to-1 | HV1561504G00010 | 1 | ||
| Musa acuminata | Anchor point | 1-to-many | MA09G04330 MA08G21530 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MA10G03220 MA09G04330 MA06G34010 | 3 | ||
| Tree-based ortholog | many-to-many | MA09G04330 MA06G34010 MA08G21530 ... | 4 | ||
| Oryza sativa ssp. indica | Anchor point | 1-to-1 | OSINDICA_03G16050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OSINDICA_03G16090 | 1 | ||
| Tree-based ortholog | many-to-1 | OSINDICA_03G16090 | 1 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-1 | OS03G17460 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G17480 | 1 | ||
| Tree-based ortholog | many-to-1 | OS03G17480 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL01G00160 | 1 | |
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00145G00830 | 1 | |
| Tree-based ortholog | many-to-1 | PP00145G00830 | 1 | ||
| Populus trichocarpa | Anchor point | 1-to-many | PT08G04680 PT16G08350 PT06G13350 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT08G04680 | 1 | ||
| Tree-based ortholog | many-to-many | PT10G21480 PT08G04680 PT16G08350 ... | 4 | ||
| Solanum lycopersicum | Anchor point | 1-to-many | SL10G084400 SL09G007150 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | SL00G007030 SL09G007150 SL12G044530 ... | 5 | ||
| Tree-based ortholog | many-to-many | SL04G009530 SL12G044530 SL12G044520 ... | 7 | ||
| Sorghum bicolor | Anchor point | 1-to-1 | SB01G038900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SB01G038900 | 1 | ||
| Tree-based ortholog | many-to-1 | SB01G038900 | 1 | ||
| Vitis vinifera | Anchor point | 1-to-many | VV06G04550 VV13G08910 VV08G01900 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV08G01900 VV08G01840 | 2 | ||
| Tree-based ortholog | many-to-many | VV13G08910 VV06G04550 VV08G01900 ... | 4 | ||
| Zea mays | Anchor point | 1-to-many | ZM01G11840 ZM09G23450 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G11860 | 1 | ||
| Tree-based ortholog | many-to-1 | ZM01G11860 | 1 |