Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SI001G07240
(Setaria italica)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Setaria italica | Orthologous gene family | SI001G07240 | 1 |  |
| Anchor point | SI001G02300 SI001G27980 SI004G27890 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | SI001G07240 | 1 | ||
| Tree-based ortholog | SI001G07240 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G79430 | 1 | |
| Tree-based ortholog | 1-to-many | AT3G12730 AT1G79430 | 2 | ||
| Brachypodium distachyon | Anchor point | many-to-many | BD5G18590 BD1G31837 BD3G05500 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BD3G05500 | 1 | ||
| Tree-based ortholog | 1-to-1 | BD3G05500 | 1 | ||
| Carica papaya | Anchor point | many-to-1 | CP00007G00760 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00032G00810 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00032G00810 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR12G01210 | 1 | |
| Tree-based ortholog | 1-to-1 | CR12G01210 | 1 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HV56357G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | HV56357G00010 | 1 | ||
| Musa acuminata | Anchor point | many-to-many | MA08G34370 MA10G23750 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MA11G14860 MA03G24270 | 2 | ||
| Tree-based ortholog | 1-to-1 | MA08G34370 | 1 | ||
| Oryza sativa ssp. indica | Anchor point | many-to-many | OSINDICA_06G30820 OSINDICA_04G40110 OSINDICA_02G43360 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OSINDICA_06G41370 | 1 | ||
| Tree-based ortholog | 1-to-1 | OSINDICA_06G41370 | 1 | ||
| Oryza sativa ssp. japonica | Anchor point | many-to-many | OS06G45410 OS02G07770 OS06G49040 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G07770 | 1 | ||
| Tree-based ortholog | 1-to-1 | OS02G07770 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL12G02830 | 1 | |
| Tree-based ortholog | 1-to-1 | OL12G02830 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00027G00020 PP00141G00520 PP00025G00660 ... | 10 | |
| Tree-based ortholog | 1-to-many | PP00013G01370 PP00012G00690 PP00033G00710 ... | 10 | ||
| Populus trichocarpa | Anchor point | many-to-many | PT08G08180 PT10G17410 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT10G17410 PT08G08180 | 2 | ||
| Tree-based ortholog | 1-to-1 | PT10G17410 | 1 | ||
| Solanum lycopersicum | Anchor point | many-to-1 | SL10G078720 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL12G017370 | 1 | ||
| Tree-based ortholog | 1-to-1 | SL12G017370 | 1 | ||
| Sorghum bicolor | Anchor point | many-to-many | SB10G021360 SB04G008670 SB04G032130 ... | 7 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SB04G004930 | 1 | ||
| Tree-based ortholog | 1-to-1 | SB04G004930 | 1 | ||
| Vitis vinifera | Anchor point | many-to-1 | VV19G09530 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV19G09530 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV19G09530 | 1 | ||
| Zea mays | Anchor point | many-to-many | ZM09G16870 ZM06G27050 ZM05G36210 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM05G20570 | 1 | ||
| Tree-based ortholog | 1-to-1 | ZM05G20570 | 1 |