Integrative Orthology Viewer: PT12G08930 (Populus trichocarpa)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Populus trichocarpa | Orthologous gene family | PT12G08930 PT15G08510 | 2 | |
Anchor point | PT15G08500 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | PT15G08510 PT12G08930 PT15G08500 | 3 | ||
Tree-based ortholog | PT12G08930 PT01G37820 | 2 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Arabidopsis thaliana | Anchor point | 1-to-1 | AT5G50200 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | AT5G50200 AT4G24730 | 2 | ||
Tree-based ortholog | many-to-1 | AT5G50200 | 1 | ||
Brachypodium distachyon | Anchor point | 1-to-1 | BD3G47710 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | BD3G47720 BD3G47710 | 2 | ||
Tree-based ortholog | many-to-many | BD3G47710 BD3G47720 | 2 | ||
Carica papaya | Orthologous gene family | many-to-1 | CP00968G00020 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00968G00020 | 1 | ||
Tree-based ortholog | many-to-1 | CP00968G00020 | 1 | ||
Hordeum vulgare | Orthologous gene family | many-to-1 | HV64422G00010 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV64422G00010 | 1 | ||
Tree-based ortholog | many-to-many | HV127434G00010 HV44268G00010 HV64422G00010 | 3 | ||
Musa acuminata | Orthologous gene family | many-to-1 | MA06G12410 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | MA10G17150 MA09G02020 MA06G12410 | 3 | ||
Tree-based ortholog | many-to-many | MA06G12410 MA10G17150 MA09G02020 | 3 | ||
Oryza sativa ssp. indica | Anchor point | 1-to-many | OSINDICA_02G36990 OSINDICA_04G32260 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_02G36990 | 1 | ||
Tree-based ortholog | many-to-many | OSINDICA_02G36990 OSINDICA_04G32260 | 2 | ||
Oryza sativa ssp. japonica | Anchor point | 1-to-many | OS04G40410 OS02G38230 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS02G38230 | 1 | ||
Tree-based ortholog | many-to-many | OS02G38230 OS04G40410 | 2 | ||
Ostreococcus lucimarinus | Tree-based ortholog | many-to-1 | OL10G00980 | 1 | |
Physcomitrella patens | Orthologous gene family | many-to-many | PP00100G01050 PP00132G00130 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00100G01050 PP00017G00870 PP00132G00130 | 3 | ||
Tree-based ortholog | many-to-many | PP00132G00130 PP00017G00870 PP00100G01050 | 3 | ||
Setaria italica | Anchor point | 1-to-1 | SI001G22890 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | SI001G22890 SI001G22900 | 2 | ||
Tree-based ortholog | many-to-many | SI001G22890 SI001G22900 | 2 | ||
Solanum lycopersicum | Orthologous gene family | many-to-1 | SL03G112100 | 1 | |
Anchor point | 1-to-1 | SL03G112090 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL03G112100 | 1 | ||
Tree-based ortholog | many-to-1 | SL03G112100 | 1 | ||
Sorghum bicolor | Anchor point | 1-to-many | SB04G024870 SB06G020180 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB04G024870 | 1 | ||
Tree-based ortholog | many-to-many | SB04G024870 SB06G020180 | 2 | ||
Vitis vinifera | Anchor point | 1-to-1 | VV17G00750 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV17G00750 | 1 | ||
Tree-based ortholog | many-to-1 | VV17G00750 | 1 | ||
Zea mays | Orthologous gene family | many-to-1 | ZM05G32740 | 1 | |
Anchor point | 1-to-many | ZM02G12270 ZM05G32740 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM05G32740 | 1 | ||
Tree-based ortholog | many-to-many | ZM05G32740 ZM02G12270 | 2 |