Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT10G24100
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT08G01710 PT10G24100 | 2 |  |
| Anchor point | PT08G01710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT08G01710 PT10G24100 | 2 | ||
| Tree-based ortholog | PT08G01710 PT08G00030 PT10G24100 | 3 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Anchor point | 1-to-many | AT5G04770 AT3G10600 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | AT5G04770 AT3G10600 | 2 | ||
| Tree-based ortholog | many-to-many | AT3G10600 AT5G04770 | 2 | ||
| Brachypodium distachyon | Anchor point | 1-to-many | BD1G13900 BD4G42150 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD4G42150 | 1 | ||
| Tree-based ortholog | many-to-1 | BD4G42150 | 1 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00575G00020 | 1 | |
| Tree-based ortholog | many-to-1 | CP00575G00020 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR01G08910 | 1 | |
| Tree-based ortholog | many-to-1 | CR07G04220 | 1 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV39457G00020 | 1 | |
| Tree-based ortholog | many-to-1 | HV50209G00010 | 1 | ||
| Musa acuminata | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MA06G36540 | 1 | |
| Tree-based ortholog | many-to-many | MA09G09150 MA06G36540 | 2 | ||
| Oryza sativa ssp. indica | Anchor point | 1-to-1 | OSINDICA_11G04250 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | OSINDICA_12G04960 OSINDICA_11G04250 | 2 | ||
| Tree-based ortholog | many-to-many | OSINDICA_12G04960 OSINDICA_11G04250 | 2 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-1 | OS12G06060 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS12G06060 | 1 | ||
| Tree-based ortholog | many-to-many | OS12G06060 OS11G05690 | 2 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL14G00150 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL14G00150 | 1 | ||
| Tree-based ortholog | many-to-1 | OL14G00150 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00023G01270 PP00077G01130 | 2 | |
| Tree-based ortholog | many-to-many | PP00023G01270 PP00077G01130 | 2 | ||
| Setaria italica | Anchor point | 1-to-1 | SI008G03570 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI008G03570 | 1 | ||
| Tree-based ortholog | many-to-many | SI007G30610 SI008G03570 | 2 | ||
| Solanum lycopersicum | Anchor point | 1-to-1 | SL11G006710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL11G006710 | 1 | ||
| Tree-based ortholog | many-to-1 | SL11G006710 | 1 | ||
| Sorghum bicolor | Anchor point | 1-to-many | SB08G003530 SB05G003440 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | SB08G003570 SB08G003530 | 2 | ||
| Tree-based ortholog | many-to-many | SB08G003570 SB08G003530 SB05G003440 | 3 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV00G07260 | 1 | |
| Anchor point | 1-to-1 | VV13G11390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV13G11390 | 1 | ||
| Tree-based ortholog | many-to-1 | VV13G11390 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM06G15030 | 1 | |
| Anchor point | 1-to-1 | ZM10G02110 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM04G30010 | 1 | ||
| Tree-based ortholog | many-to-many | ZM10G02110 ZM04G30010 | 2 |