Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT10G03790
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT08G19290 PT10G03790 | 2 |  |
| Anchor point | PT15G06980 PT08G19290 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT08G19290 PT10G03790 | 2 | ||
| Tree-based ortholog | PT10G03790 PT08G19290 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT1G70140 | 1 | |
| Anchor point | many-to-many | AT1G70140 AT1G59910 AT1G24150 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | AT1G70140 AT1G24150 | 2 | ||
| Tree-based ortholog | many-to-many | AT1G70140 AT1G24150 AT1G59910 | 3 | ||
| Brachypodium distachyon | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD3G59780 | 1 | |
| Tree-based ortholog | many-to-1 | BD3G59780 | 1 | ||
| Carica papaya | Anchor point | many-to-1 | CP00005G03220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00035G00180 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00005G03220 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR03G05620 | 1 | |
| Tree-based ortholog | many-to-1 | CR03G05620 | 1 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV55840G00010 | 1 | |
| Tree-based ortholog | many-to-1 | HV40939G00020 | 1 | ||
| Musa acuminata | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MA08G23210 | 1 | |
| Tree-based ortholog | many-to-many | MA08G23210 MA06G04550 | 2 | ||
| Oryza sativa ssp. indica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_02G48820 | 1 | |
| Tree-based ortholog | many-to-1 | OSINDICA_02G48820 | 1 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS01G67240 | 1 | |
| Tree-based ortholog | many-to-many | OS02G06580 OS07G36150 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL06G01310 | 1 | |
| Tree-based ortholog | many-to-1 | OL07G01070 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00344G00070 PP00122G00670 PP00156G00760 ... | 4 | |
| Tree-based ortholog | many-to-many | PP00071G00570 PP00017G00290 PP00156G00760 ... | 4 | ||
| Setaria italica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI001G32670 | 1 | |
| Tree-based ortholog | many-to-1 | SI001G32670 | 1 | ||
| Solanum lycopersicum | Anchor point | many-to-many | SL03G113710 SL05G006430 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL03G113710 | 1 | ||
| Tree-based ortholog | many-to-1 | SL03G113710 | 1 | ||
| Sorghum bicolor | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB04G028490 | 1 | |
| Tree-based ortholog | many-to-many | SB04G028490 SB01G028190 | 2 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV01G13260 VV14G01820 VV17G02450 | 3 | |
| Anchor point | many-to-1 | VV01G13260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | VV01G13260 VV14G01820 | 2 | ||
| Tree-based ortholog | many-to-many | VV14G01820 VV01G13260 | 2 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM05G39780 | 1 | |
| Tree-based ortholog | many-to-1 | ZM05G39780 | 1 |