Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT05G16740
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT05G16740 | 1 |  |
| Anchor point | PT02G09270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT05G16740 PT02G09270 | 2 | ||
| Tree-based ortholog | PT05G16910 PT05G16740 PT02G09270 | 3 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-many | AT1G36160 AT1G36180 | 2 | |
| Tree-based ortholog | many-to-1 | AT1G36160 | 1 | ||
| Brachypodium distachyon | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD3G24417 | 1 | |
| Tree-based ortholog | many-to-1 | BD3G24417 | 1 | ||
| Carica papaya | Anchor point | 1-to-1 | CP00066G00810 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00066G00810 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00066G00810 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR08G04010 | 1 | |
| Tree-based ortholog | many-to-many | CR08G04010 CR06G02380 CR08G01040 ... | 5 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV2548035G00010 | 1 | |
| Tree-based ortholog | many-to-many | HV2548035G00010 HV39896G00010 | 2 | ||
| Musa acuminata | Anchor point | 1-to-1 | MA06G10740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MA10G19450 | 1 | ||
| Tree-based ortholog | many-to-1 | MA10G19450 | 1 | ||
| Oryza sativa ssp. indica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_05G20320 | 1 | |
| Tree-based ortholog | many-to-1 | OSINDICA_10G13590 | 1 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS10G21910 | 1 | |
| Tree-based ortholog | many-to-1 | OS10G21910 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL10G03480 | 1 | |
| Tree-based ortholog | many-to-many | OL08G00900 OL10G03480 OL01G03570 | 3 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00013G00860 PP00158G00190 | 2 | |
| Tree-based ortholog | many-to-many | PP00158G00190 PP00013G00860 | 2 | ||
| Setaria italica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI009G27920 | 1 | |
| Tree-based ortholog | many-to-1 | SI009G27920 | 1 | ||
| Solanum lycopersicum | Anchor point | 1-to-1 | SL12G056940 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL12G056940 | 1 | ||
| Tree-based ortholog | many-to-1 | SL12G056940 | 1 | ||
| Sorghum bicolor | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB08G016820 | 1 | |
| Tree-based ortholog | many-to-1 | SB08G016820 | 1 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV18G03220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV18G03220 | 1 | ||
| Tree-based ortholog | many-to-1 | VV18G03220 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM05G12030 | 1 | |
| Tree-based ortholog | many-to-1 | ZM05G12030 | 1 |