Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT04G01980
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT04G01980 | 1 |  |
| Best-Hits-and-Inparalogs(BHI)family | PT04G01970 PT04G01950 PT04G01980 ... | 4 | ||
| Tree-based ortholog | PT04G01980 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G21760 | 1 | |
| Tree-based ortholog | 1-to-1 | AT4G21760 | 1 | ||
| Brachypodium distachyon | Orthologous gene family | 1-to-1 | BD5G15540 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD5G15540 | 1 | ||
| Tree-based ortholog | 1-to-many | BD5G15527 BD5G15540 | 2 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00198G00230 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00198G00230 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00198G00230 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-many | CR03G06580 CR07G01960 | 2 | |
| Tree-based ortholog | 1-to-many | CR03G06580 CR07G01960 | 2 | ||
| Hordeum vulgare | Orthologous gene family | 1-to-1 | HV1561261G00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV275241G00010 | 1 | ||
| Tree-based ortholog | 1-to-many | HV275241G00010 HV1561261G00010 HV305436G00010 | 3 | ||
| Musa acuminata | Orthologous gene family | 1-to-1 | MA04G29690 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MA04G29690 | 1 | ||
| Tree-based ortholog | 1-to-many | MA08G19580 MA11G06700 MA04G29690 | 3 | ||
| Oryza sativa ssp. indica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_04G35530 | 1 | |
| Tree-based ortholog | 1-to-many | OSINDICA_04G35480 OSINDICA_04G35520 OSINDICA_04G35510 ... | 4 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS04G43410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS04G43410 | 1 | ||
| Tree-based ortholog | 1-to-many | OS04G43360 OS04G43390 OS04G43400 ... | 4 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL11G02150 | 1 | |
| Tree-based ortholog | 1-to-1 | OL11G02150 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00114G00740 PP00001G03190 PP00137G00190 ... | 4 | |
| Tree-based ortholog | 1-to-many | PP06328G00010 PP00114G00740 PP00009G00390 ... | 11 | ||
| Setaria italica | Orthologous gene family | 1-to-1 | SI007G17090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI007G17090 | 1 | ||
| Tree-based ortholog | 1-to-many | SI007G17070 SI007G17040 SI007G17080 ... | 5 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL02G080300 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | SL02G080300 SL02G080310 SL02G080290 ... | 4 | ||
| Tree-based ortholog | 1-to-many | SL02G080290 SL02G080300 SL02G080310 ... | 4 | ||
| Sorghum bicolor | Orthologous gene family | 1-to-1 | SB06G022385 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB06G022410 | 1 | ||
| Tree-based ortholog | 1-to-many | SB06G022410 SB06G022385 SB06G022420 ... | 9 | ||
| Vitis vinifera | Orthologous gene family | 1-to-many | VV19G03380 VV19G03390 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV10G00470 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV10G00470 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-1 | ZM10G20210 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM02G10220 | 1 | ||
| Tree-based ortholog | 1-to-many | ZM02G10190 ZM02G10210 ZM02G10220 ... | 5 |