Integrative Orthology Viewer: PT04G00490 (Populus trichocarpa)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Populus trichocarpa | Orthologous gene family | PT04G00490 PT11G01080 | 2 | |
Anchor point | PT14G15710 PT11G01080 PT02G22600 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | PT04G00490 PT11G01080 | 2 | ||
Tree-based ortholog | PT04G00490 PT11G01080 | 2 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Arabidopsis thaliana | Anchor point | many-to-many | AT4G22140 AT4G04260 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G22140 | 1 | ||
Tree-based ortholog | many-to-many | AT4G04260 AT4G22140 | 2 | ||
Brachypodium distachyon | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD4G29560 | 1 | |
Tree-based ortholog | many-to-many | BD4G29560 BD3G36110 | 2 | ||
Carica papaya | Anchor point | many-to-1 | CP00152G00530 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00152G00530 | 1 | ||
Tree-based ortholog | many-to-1 | CP00152G00530 | 1 | ||
Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR16G05650 | 1 | |
Tree-based ortholog | many-to-1 | CR16G05650 | 1 | ||
Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV275212G00010 | 1 | |
Tree-based ortholog | many-to-many | HV275212G00010 HV6070G00010 | 2 | ||
Musa acuminata | Best-Hits-and-Inparalogs(BHI)family | many-to-many | MA03G08180 MA07G02330 | 2 | |
Tree-based ortholog | many-to-many | MA10G01370 MA02G19100 MA07G02330 ... | 6 | ||
Oryza sativa ssp. indica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_09G16690 | 1 | |
Tree-based ortholog | many-to-many | OSINDICA_09G17480 OSINDICA_09G16690 OSINDICA_08G30780 | 3 | ||
Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS09G21770 | 1 | |
Tree-based ortholog | many-to-many | OS09G21770 OS08G32620 | 2 | ||
Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL03G05490 | 1 | |
Tree-based ortholog | many-to-1 | OL03G05490 | 1 | ||
Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00307G00090 PP00056G00740 PP00298G00290 | 3 | |
Tree-based ortholog | many-to-many | PP00384G00120 PP00171G00060 PP00056G00740 ... | 6 | ||
Setaria italica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI006G15070 | 1 | |
Tree-based ortholog | many-to-many | SI002G20000 SI006G15070 | 2 | ||
Solanum lycopersicum | Anchor point | many-to-many | SL07G049210 SL02G081130 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL07G049210 | 1 | ||
Tree-based ortholog | many-to-many | SL07G049210 SL05G042030 | 2 | ||
Sorghum bicolor | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB07G020610 | 1 | |
Tree-based ortholog | many-to-many | SB02G023940 SB07G020610 | 2 | ||
Vitis vinifera | Anchor point | many-to-many | VV12G11260 VV00G23960 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | VV12G11260 VV00G23960 | 2 | ||
Tree-based ortholog | many-to-1 | VV00G23960 | 1 | ||
Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM07G13260 | 1 | |
Tree-based ortholog | many-to-many | ZM07G13260 ZM01G38750 ZM04G13550 | 3 |