Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT03G20580
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT03G20580 | 1 |  |
| Anchor point | PT01G01830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT03G20580 PT01G01830 | 2 | ||
| Tree-based ortholog | PT03G20580 PT01G01830 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Anchor point | 1-to-many | AT1G51170 AT3G20830 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | AT1G51170 AT3G20830 | 2 | ||
| Tree-based ortholog | many-to-many | AT3G20830 AT1G51170 | 2 | ||
| Brachypodium distachyon | Anchor point | 1-to-1 | BD3G39860 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD4G33610 | 1 | ||
| Tree-based ortholog | many-to-many | BD4G33610 BD3G39860 | 2 | ||
| Carica papaya | Anchor point | 1-to-1 | CP00084G00820 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00084G00820 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00084G00820 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR03G14620 | 1 | |
| Tree-based ortholog | many-to-many | CR13G03990 CR11G00460 CR01G06520 ... | 8 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV50864G00010 | 1 | |
| Tree-based ortholog | many-to-many | HV42838G00010 HV50864G00010 | 2 | ||
| Musa acuminata | Best-Hits-and-Inparalogs(BHI)family | many-to-many | MA05G22880 MA07G02150 | 2 | |
| Tree-based ortholog | many-to-many | MA05G22880 MA07G02150 | 2 | ||
| Oryza sativa ssp. indica | Anchor point | 1-to-many | OSINDICA_08G37840 OSINDICA_09G25080 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_08G37840 | 1 | ||
| Tree-based ortholog | many-to-many | OSINDICA_09G25080 OSINDICA_08G37840 | 2 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-many | OS08G39460 OS09G31210 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS08G39460 | 1 | ||
| Tree-based ortholog | many-to-many | OS09G31210 OS08G39460 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL15G02420 | 1 | |
| Tree-based ortholog | many-to-many | OL07G02780 OL03G02190 OL09G00840 ... | 8 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00509G00030 PP00174G00220 PP00179G00140 ... | 5 | |
| Tree-based ortholog | many-to-many | PP00004G01490 PP00086G00430 PP00022G02330 ... | 14 | ||
| Setaria italica | Anchor point | 1-to-many | SI006G20240 SI002G25770 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI002G25770 | 1 | ||
| Tree-based ortholog | many-to-many | SI002G25770 SI006G20240 | 2 | ||
| Solanum lycopersicum | Anchor point | 1-to-1 | SL11G061720 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL11G061720 | 1 | ||
| Tree-based ortholog | many-to-1 | SL11G061720 | 1 | ||
| Sorghum bicolor | Anchor point | 1-to-many | SB02G028250 SB07G027930 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB02G028250 | 1 | ||
| Tree-based ortholog | many-to-many | SB02G028250 SB07G027930 | 2 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV06G06370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV06G06370 | 1 | ||
| Tree-based ortholog | many-to-1 | VV06G06370 | 1 | ||
| Zea mays | Anchor point | 1-to-many | ZM07G17790 ZM01G32330 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM07G17790 | 1 | ||
| Tree-based ortholog | many-to-many | ZM02G32670 ZM07G17790 ZM01G32330 ... | 4 |