Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT01G02080
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT01G02080 | 1 |  |
| Anchor point | PT03G20380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT03G20380 PT01G02080 | 2 | ||
| Tree-based ortholog | PT01G02080 PT03G20380 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT2G41540 | 1 | |
| Tree-based ortholog | many-to-1 | AT2G41540 | 1 | ||
| Brachypodium distachyon | Anchor point | 1-to-1 | BD2G52570 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD2G60390 | 1 | ||
| Tree-based ortholog | many-to-many | BD2G52570 BD2G21150 BD2G60390 | 3 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00197G00180 | 1 | |
| Tree-based ortholog | many-to-1 | CP00197G00180 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR12G03160 | 1 | |
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV51863G00010 | 1 | |
| Tree-based ortholog | many-to-many | HV137283G00010 HV38664G00010 HV51863G00010 | 3 | ||
| Musa acuminata | Best-Hits-and-Inparalogs(BHI)family | many-to-many | MA11G06000 MA08G10190 | 2 | |
| Tree-based ortholog | many-to-many | MA11G06000 MA08G10190 MA08G24650 ... | 4 | ||
| Oryza sativa ssp. indica | Anchor point | 1-to-1 | OSINDICA_01G55740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_01G67660 | 1 | ||
| Tree-based ortholog | many-to-many | OSINDICA_01G55740 OSINDICA_05G37310 OSINDICA_01G67660 | 3 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-many | OS01G58740 OS01G71280 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS01G71280 | 1 | ||
| Tree-based ortholog | many-to-many | OS01G58740 OS05G41590 OS01G71280 | 3 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00323G00050 PP00114G01130 | 2 | |
| Tree-based ortholog | many-to-many | PP00323G00050 PP00114G01130 | 2 | ||
| Setaria italica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI005G45950 | 1 | |
| Tree-based ortholog | many-to-many | SI005G35820 SI003G19530 SI007G20970 ... | 5 | ||
| Solanum lycopersicum | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL01G088150 | 1 | |
| Tree-based ortholog | many-to-1 | SL01G088150 | 1 | ||
| Sorghum bicolor | Anchor point | 1-to-1 | SB03G045390 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB03G045390 | 1 | ||
| Tree-based ortholog | many-to-many | SB03G037280 SB09G024310 SB03G045390 | 3 | ||
| Vitis vinifera | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV13G01190 | 1 | |
| Tree-based ortholog | many-to-1 | VV13G01190 | 1 | ||
| Zea mays | Anchor point | 1-to-many | ZM08G33380 ZM03G21360 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM03G21360 | 1 | ||
| Tree-based ortholog | many-to-many | ZM08G33380 ZM08G18680 ZM03G21360 | 3 |