Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M016473
Gene count gene family
3
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60916.88%33.33%4.84
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20219.78%33.33%3.41
Brachypodium distachyon26,63215.29%33.33%6.3
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%33.33%2.27
Panicoideae3109,485121.76%33.33%1.53
Oryza289,940117.87%33.33%1.87
Pooideae250,950110.12%33.33%3.29
BEP_Clade4140,890228%66.67%2.38
Poaceae7250,375349.75%100%2.01
Monocots8287,013357.03%100%1.75
Brassicales255,443011.02%0%0
Rosids1396,877019.25%0%0
Rosids4123,381024.52%0%0
Dicots5158,194031.44%0%0
Angiosperms13445,207388.47%100%1.13
Embryophyta14477,607394.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2313100%100%1