Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M009409
Gene count gene family
5
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%20%2.83
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20219.78%20%2.04
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31814.83%20%4.14
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43418.23%20%2.43
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40016.44%20%3.11
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485121.76%20%0.92
Oryza289,940117.87%20%1.12
Pooideae250,950110.12%20%1.98
BEP_Clade4140,890228%40%1.43
Poaceae7250,375349.75%60%1.21
Monocots8287,013357.03%60%1.05
Brassicales255,443011.02%0%0
Rosids1396,877119.25%20%1.04
Rosids4123,381124.52%20%0.82
Dicots5158,194131.44%20%0.64
Angiosperms13445,207488.47%80%0.9
Embryophyta14477,607594.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2315100%100%1