Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M009259
Gene count gene family
5
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%20%2.56
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%20%2.83
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02715.57%20%3.59
Populus trichocarpa41,43418.23%20%2.43
Vitis vinifera26,50415.27%20%3.8
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%20%1.36
Panicoideae3109,485221.76%40%1.84
Oryza289,940017.87%0%0
Pooideae250,950010.12%0%0
BEP_Clade4140,890028%0%0
Poaceae7250,375249.75%40%0.8
Monocots8287,013257.03%40%0.7
Brassicales255,443111.02%20%1.81
Rosids1396,877219.25%40%2.08
Rosids4123,381324.52%60%2.45
Dicots5158,194331.44%60%1.91
Angiosperms13445,207588.47%100%1.13
Embryophyta14477,607594.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2315100%100%1