Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M007567
Gene count gene family
5
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%20%2.56
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20219.78%20%2.04
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02715.57%20%3.59
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80521.55%40%25.81
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%20%1.36
Panicoideae3109,485121.76%20%0.92
Oryza289,940117.87%20%1.12
Pooideae250,950010.12%0%0
BEP_Clade4140,890128%20%0.71
Poaceae7250,375249.75%40%0.8
Monocots8287,013257.03%40%0.7
Brassicales255,443111.02%20%1.81
Rosids1396,877119.25%20%1.04
Rosids4123,381124.52%20%0.82
Dicots5158,194131.44%20%0.64
Angiosperms13445,207388.47%60%0.68
Embryophyta14477,607394.91%60%0.63
Chlorophyta225,62425.09%40%7.86
Viridiplantae16503,2315100%100%1